Genetic diversity analysis of some Bangladeshi aromatic rice (Oryza sativa L.) using simple sequence repeat markers (SSRM)

Abstract

In order to germplasm management, conservation, parental identification and proper utilization of aromatic rice germplasm of Bangladesh genetic diversity assessment and molecular characterization is necessary. We used ten microsatellite markers across twenty aromatic rice landraces along with four improved varieties to discriminate and characterize among them. The number of alleles per locus ranged from 2 to 8, with an average of 4.30 alleles across 10 loci. A total of 43 polymorphic alleles were detected. The values of Polymorphic information content (PIC) ranged from 0.217 to 0.835 (average 0.495) which indicate high genetic diversity among the studied aromatic rice genotypes. It was concluded by the PIC value of RM5339 that it might be the finest marker for diversity estimation and characterize of these aromatic rice genotypes, followed by RM334, RM414 and RM28502 markers. The UPGMA cluster dendrogram constructed in this study identified seven clusters with a correlation coefficient 0.874. Molecular characterization of aromatic rice landraces of Bangladesh exhibited large variations among the genotypes. Five rice genotypes namely BRRI dhan38, BRRI dhan50, Bashmoti safed, Malaysira, Khas-kani showed highest genetic dissimilarity among the studied rice genotypes. The findings of this study would be useful for background selection in backcross breeding programs for aromatic rice improvement as well as identification of genetically distant and genetically close accessions for maintenance and conservation.