Assessment of potentiality of known bacterial blight resistant genes against Xanthomonas oryzae pv. oryzae pathotypes exist in Bangladesh

Md. Mahbubul Haque 1 , Md. Mostafa Masud 2 , Md. Mokarram Hossain 3 , Md. Mamunur Rashid 4 , Md. Zahangir Alam 5 , Md. Rashidul Islam 6

1   Plant Pathology Division, Bangladesh Institute of Nuclear Agriculture (BINA), Mymensingh - 2202, BANGLADESH
2   Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh - 2202, BANGLADESH
3   Central Packing House, Quarantine Wing, Department of Agricultural Extension (DAE), Shampur, Dhaka - 1204, BANGLADESH
4   Plant Pathology Division, BRRI Regional Station, Cumilla – 3500, BANGLADESH
5   Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh - 2202, BANGLADESH
6   Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh - 2202, BANGLADESH

✉ Coressponding author: See PDF.

doi https://doi.org/10.26832/24566632.2021.060301

doi

Abstract

Bacterial blight (BB) caused by X. oryzae pv. oryzae is a destructive disease of rice and causes 30-50% losses to rice depending on the outbreak. Development BB resistant rice varieties have long been considered as one of the most effective approach to control the disease. However, the durability of host resistance is breaking down due to the change of pathotypes of X. oryzae pv. oryzae globally. Pathotypic analyses of 239 X. oryzae pv. oryzae Bangladeshi isolates on Near Isogenic Lines (NILs) containing resistance (R) gene (s) revealed the existence of eight pathotypes of X. oryzae pv. oryzae. Among eight pathotypes, pathotypes IV and V were considered as major comprising  maximum number of isolates, (30.13% and 23.01%, respectively), whereas pathotype VIII considered as minor consisting only 2.51% of total isolates. Pathotype, I showed highest virulence or aggressiveness compatible with all NILs, whereas pathotype VIII exhibited lowest virulence to these NILs. Bacterial blight resistant genes viz. Xa1 (75.00%), Xa11 (62.50%) and Xa21 (50.00%) showed resistance to most of the pathotypes while Xa4 performed worst as compared to all others R-genes. In pyramid lines, IRBBB63 (Xa5+Xa7+Xa13) and IRBB57 (Xa5+Xa7 +Xa21) showed resistance reaction and IRBB61 (Xa4+Xa5+Xa7), IRBB60 (Xa4+Xa5+Xa13+Xa21), IRBB54 (Xa5+Xa21), and IRBB53 (Xa4+Xa21) showed susceptible reaction to X. oryzae pv. oryzae pathotypes. These results collectively indicated the deployment of Xa1, Xa11, Xa4, Xa5, Xa7, Xa13 and Xa21 either alone or in combination against BB would be a best choice for the development of BB resistant rice varieties in Bangladesh.

Keywords:

Performance, R-genes, X. oryzae pv. oryzae

Downloads

Download data is not yet available.

References

Adachi, N., & Oku, T. (2000). PCR-mediated Detection of X. oryzae pv. oryzae by Amplification of the 16S–23S rDNA Spacer Region Sequence. Journal of General Plant Pathology, 66(4), 303.

Adhikari, T. B., Basnyat, R.C., & Mew, T. W. (1999a). Virulence of X. oryzae pv.

oryzae on rice lines containing single resistance genes and gene combinations. Plant Disease, 83, 46–50.

Adhikari, T. B., Mew T. W., & Leach J. E. (1999). Genotypic and pathotypic diversity in X. oryzae pv. oryzae in Nepal. Phytopathology, 89, 687-694.

Adhikari, T. B., Vera Cruz, C. M., Nelson, Q., Mew, T. W., & Leach, J. E. (1995).

Genetic diversity of X. oryzae pv. oryzae in Asia. Applied Environmental Microbiology, 61, 966-971.

Alam, S, Islam, R., Hossain, I., & Bhuiyan, M. R. (2016). Pathotypic variation of X. oryzae pv. oryzae in Bangladesh. Archives of Phytopathology and Plant Protection, 323, 1477-2906.

Bai, J., & Shi, X. (1993). Major progresses in the studies on rice bacterial blight. Journal of Basic Science and Engineering, 1, 71–80.

Bharani, M., Nagarajan, P., Rabindran, R., Saraswathi, R., Balasubramanian, P., & Ramalingam, J. (2010). Bacterial leaf blight resistance genes (Xa21, Xa13 and X5) pyramiding through molecular marker assisted selection into rice cultivars. Archives of Phytopathology and Plant Protection, 43(10), 1032-1043.

Brar, D.S., & Khush, GS. (1997). Alien introgression in rice. Plant Molecular Biology, 35, 35–47.

Browder, L. E., & Eversmeyer, M. G. (1977). Pathogenicity associations in Puccinia recondita tritici. Phytopathology, 77, 766–771.

Busungu, C., Taura, S., Sakagami, J. I., Anai, T., & Ichitani, K. (2018). High-resolution mapping and characterization of xa42, a resistance gene against multiple X. oryzae pv. oryzae races in rice (Oryza sativa L.). Breeding Science, 68(2), 188-199.

Cheema, K., Grewal, N., & Vikal, Y. (2008). A novel bacterial blight resistance gene from Oryza nivara mapped to 38 kb and 4 L and transferred to Oryza sativa L. Genetics Research (Camb) 90, 397–407.

Chen, S., Wang, C., Yang, J., Chen, B., Wang, W., Su, J., & Feng, A. (2020). Identification of the novel bacterial blight resistance gene Xa46 ( t ) by mapping and expression analysis of the rice mutant H120. Scientific Reports. 46, 1–11, https://doi.org/10.1038/s41598-020-69639-y

Furuya, N., Taura, S., Goto, T., Thuy, B. T., Ton, P. H., Tsuchiya, K., & Yoshimura, A. (2012). Diversity in virulence of Xanthomonas oryzae pv. oryzae from Northern Vietnam. Japan Agricultural Research. Q. 46, 329–338, https://doi.org/10.6090/jarq.46.329

Gautam R. K, Omvir, & Bharaj T. S. (2005). Breeding bacterial blight resistant rice (Oryza sativa L.) hybrids. Indian Journal of Genetics and Plant Breeding, 65,

–122.

Gautam, R. K., Singh, P. K., Sakthivel, K., Srikumar, M., Kumar, N., Kumar, K., Singh, A. K., & Roy, S. D. (2015). Analysis of Pathogenic Diversity of the Rice Bacterial Blight Pathogen (Xanthomonas oryzae pv. oryzae) in the Andaman Islands and Identification of Effective Resistance Genes. Journal of Phytopathology, 163, 423–432, https://doi.org/10.1111/jph.12338

George, M. L. C., Bustamam, M., Cruz, W. T. Leach, J. E., & Nelson, R. J. (1997). Movement of Xanthomonas oryzae pv. oryzae in Southeast Asia detected using PCR-based DNA fingerprinting. Phytopathology 87, 302–309.

Gonzalez, C., Szurek, B., Manceau, C., Mathieu, T., Se´ re´Y, & Verdier V. (2007). Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa. Molecular Plant Microbe Interaction, 20, 534–546.

Huang, N., Angeles, E. R., Domingo, J., Magpantay, G., Singh, S., Zhang, G.,

Kumaravadivel, N., Bennett, J., & Khush, G. S. (1997). Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theoretical Applied Genetics, 95, 313–320.

Ishiyama, S. (1922). Studies of bacterial leaf blight of rice. Report of the Imperial Agricultural Station, 45, 233-261.

Islam, M. R., Alam, M. S., Khan, A. I., Hossain, I., Adam, L. R., & Daayf, F. (2016).

Analyses of genetic diversity of bacterial blight pathogen, X. oryzae pv. oryzae using IS1112 in Bangladesh. Comptes Rendus Biologies, 339(9-10), 399–407.

Jeung, J. U., Heu, S. G., Shin, M. S., Vera Cruz, C. M., & Jean, K. K. (2006). Dynamics of X. oryzae pv. oryzae populations in Korea and their relationship to known bacterial blight resistance genes. Phytopathology, 96, 867-875.

Kauffman, H. E., Reddy, A. P. K., Hsieh, S. P. Y., & Merca, S. D. (1973). An improved technique for evaluating resistance of rice varieties to X. oryzae. Plant Disease Reporter, 57, 537-541.

Khan, J. A., Arshad, H. M. I., Saleem, K., Sandhu, A. F., Hasnain, S., & Babar, M. M. (2012) Evaluation of resistance genes in rice against local isolates of

Xanthomonas oryzae pv. oryzae in Punjab province of Pakistan. Archives of Phytopathology and Plant Protection, 45, 1826–1839.

Khan, M. A. I., Kabir, M. S., Monsur, M. A., & Mia, M. A. T. (2009). Pathogen diversity of Xanthomonas oryzae pv. oryzae in Bangladesh. Bangladesh Journal of Plant Pathology, 25, 1-6.

Khan, M. A. I., Kabir, M.S., Monsur, M.A., Khatun, M.T., Rashid, M.M., Bhuiyan, M.R., Ansari, T.H., Ali, M.A., & Mia, M. A. T. (2010). Reaction of some pyramid lines to bacterial leaf blight pathogen in Bangladesh. Bangladesh Journal of Plant Pathology, 26(1&2), 45-51.

Khush G. S., Mackill. D. J., & Sidhu, G. S. (1989). Breeding rice resistance to bacterial blight. in: IRRI. (Eds.), Bacterial Blight of Rice. Manila, Philippines, International Rice Research Institute, Philippines, Manila, pp. 207–217.

Kim, S. M., Reinke, R., & Kim, B. K. (2018). Correction to: developing japonica rice introgression lines with multiple resistance genes for Brown Planthopper, bacterial blight, rice blast, and rice stripe virus using molecular breeding. Molecular Genetics and Genomics. https://doi. org/10.1007/s0043 8-018-1476-8

Klement, A., & R. Goodman. (1967). The hyperensitivity reaction to infection by bacterial plant pathogens. Annual Review of Phytopathology, 5, 17-44.

Leach, J. E., Rhoads, M. L., Vera Cruz, C. M., White, F. F., Mew, T. W., & Leung, H. (1992). Assessment of Genetic Diversity and Population Structure of X. oryzae pv. oryzae with a Repetitive DNA Element. Applied and Environmental Microbiology, 58, 2188-2195.

Lebeda A. (1982). Measurement of genetic diversity of virulence in populations of phytopathogenic fungi. Journal of plant Disease Protection, 89, 88–95.

Lee, K. S., Rasabandith, S., Angeles, E. R., & Khush, G. S. (2003). Inheritance of

resistance to bacterial blight in 21 cultivars of rice. Phytopathology, 93, 147–152.

Lee, S. W., Choi, S. H, Han, S. S, Lee, D. G., &Lee, B. Y. (1999). Distribution

of Xanthomonas oryzae pv. oryzae strains virulent to Xa21 in Korea.

Phytopathology, 89, 928–933.

Leung, H., Nelson, R. J., & Leach, J. E. (1993). Population structure of plant

pathogenic fungi and bacteria. Advance Plant Pathology, 10, 157–250.

Li, G., Song, C. F., Pang, X. M., Yang, Y., & Wang, J. S. (2009). Analysis of pathotypic and genotypic diversity of X. oryzae pv. oryzae in China. Journal of Phytopathology, 157, 208–218.

Li, Z. K., Sanchez, A., Angeles, E., Singh, S., & Domingo, J. (2001). Are the dominant and recessive plant disease resistance genes similar: A case study of rice R genes and X. oryzae pv. oryzae races. Genetics, 159, 757-765.

Liu, H., Yang, W., Hu, B., & Liu, F. (2007). Virulence analysis and race classification of X. oryzae pv. oryzae in China. Journal of Phytopathology, 3, 129–135.

Lore J. S, Vikal, Y., Hunjan, M. S, Goel, R. K., Bharaj, T. S., & Raina, G.L. (2011).

Genotypic and pathotypic diversity of Xanthomonas oryzae pv. oryzae, the cause of bacterial blight of rice in Punjab state of India. Journal of Phytopathology, 59, 479–487.

Mew, T. W. (1987). Current status and future prospects of research on bacterial blight of rice. Annual Reviews of Phytopathology, 25, 359-382.

Mew, T. W., & Vera Cruz, C. M. (1978). Variability of Xanthomonas oryzae: specificity in infection of rice differentials. Phytopathology 69, 152–155.

Mew, T. W., Alvarez, A. M., Leach, J. E., & Swings, J. (1993). Focus on bacterial blight of rice. Plant Disease, 77, 5-12.

Mew, T. W., Wu, S. Z., & Horino, H. (1982). Pathotypes of X. campestris pv. oryzae in Asia. IRRI Research Paper Series 75. International Rice Research Institute, Manila, the Philippines.

Mishra, D., Vishnupriya, M. R., Anil, M. G., Konda, K., Raj, Y., & Sonti, R. V. (2013). Pathotype and genetic diversity amongst Indian isolates of X. oryzae pv. oryzae. PLoS ONE, 8, 81996.

Narayanan, N. N., Baisakh, N., Vera-Cruz, C. M., Gnanamanickam, S. S., Datta, K., & Datta, S. K. (2002). Molecular breeding for the development of blast and bacterial blight resistance in rice cv. IR50. Crop Science, 42, 2072–2079.

Nayak, P. (1986). Impact of host resistance on the variability in virulence of

Xanthomonas campestris pv. oryzae. Journal of phytopathology, 116(2), 162-166.

Nelson, R., Baraoidan, J., Vera Cruz, M. R., Yap, C. M., Leach, I. V., Mew, J. E., & Leung, H. (1994). Relationship between phylogeny and pathotype for the bacterial blight pathogen of rice. Applied and Environmental Microbiology, 60, 3275-3283.

Nino Liu, D. O., Ronald, P. C., & Bogdanove, J. A. (2006). Xanthomonas oryzae pathovars: model pathogens of a model crop. Molecular Plant Pathology, 7, 303–324.

Noda T., Li, C., Li, J., Ochiai, H., Ise, K., & Kaku, H. (2001). Pathogenic diversity of Xanthomonas oryzae pv. oryzae strains from Yunnan province, China. Japan Agricultural Research Quarterly, 35, 97–103.

Ochiai, H., Horino, O., Miyajima, K., & Kaku, H. (2000). Genetic diversity of

Xanthomonas oryzae pv. oryzae strains from Sri Lanka. Phytopathology, 90, 415–421.

Ou, S. H. (1985). Rice Diseases. 2nd ed., Commonwealth Mycological Institute, Kew, Surrey, England. pp. 61-96.

Rashid, M. M., Nihad, S. A. I., & Khan, M. A. I. (2021). Pathotype profiling,

distribution and virulence analysis of Xanthomonas oryzae pv. oryzae causing bacterial blight disease of rice in Bangladesh. Journal of Phytopathology, 169, 438– 446, https://doi.org/10.1111/jph.13000

Sanchez, A. C., Brar, D. S., Huang, N., Li, Z., & Khush, G. S. (2000). Sequence tagged site marker-assisted selection for three bacterial blight resistance genes in rice. Crop Science, 40, 792–797.

Shanti, M. L, Goerge, M. L. C., Vera Cruz, C. M., Bernardo, M. A., Nelson, R. J., Leung, H., Reddy, J. N., & Sridhar, R. (2001). Identification of resistance genes

effective against rice bacterial blight pathogen in eastern India. Plant Disease, 85, 506–512.

Singh, S., Sidhu, J. S., Huang, N., Vikal, Y., Li, Z., Brar, D. S., Dhaliwal, H. S., & Khush, G. S. (2001). Pyramiding three bacterial blight resistance genes (Xa5, Xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106. Theoretical Applied Genetics, 102, 1011–1015.

Song, W. Y., Wang, G. L., Chen, L., Kim, H. S., Pi, L. Y., Holsten, T., Wang, B., Zhai, W. X., Zhu, L. H., Fauquet, C., & Ronald, P. C. (1995). A receptor kinase-like protein encoded by the rice disease resistance gene Xa21. Science, 270, 1804-1806.

Sundaram, R. M., Vishnupriya, M. R., Biradar, S. K., Laha, G. S., Shobha Rani, N., Sarma, N. P., & Sonti, R. V. (2008). Marker assisted introgression of bacterial blight resistance in Sambha Mahsuri, an elite indica rice variety. Euphytica, 160, 411–422.

Suparyono, Sudir, & dan Suprihanto. (2003). Komposisi patotipe patogen hawar daun bakteri pada tanaman padi stadium tumbuh berbeda. Penelitian Pertanian Tanaman Pangan, 22 (1), 45-50.

Swings, J., Van Den Mooter, M., Vauterin, L., Hoste, B., Gillis, M., Mew, T. W., & Kersters, K. (1990). Reclassification of the causal agents of bacterial blight X. campestris pathovar oryzae and bacterial leaf streak X. campestris pathovar oryzicola of rice as pathovars of X. oryzae new species Ex Ishiyama 1922 Revived Name. International Journal of Systematic Bacteriology, 40, 309–311.

Tekete, C., Cunnac, S., Doucour, H., Dembele, M., Keita, I., Sarra, S., Dagno, K., Koita, O., & Verdier, V. (2020). Characterization of New Races of Xanthomonas oryzae pv . oryzae in Mali Informs Resistance Gene Deployment. Phytopathology, 110, 267–277, https://doi.org/10.1094/PHYTO-02-19-0070-R

Ullah, I., Jamil, S., Iqbal, M. Z., Shaheen, H. L., Hasni, H. M., Jabeen, S., Mehmood, A., & Akhter, M. (2012). Detection of bacterial blight resistance genes in basmati rice land races. Genetics and Molecular Research, 11, 1960–1966.

Vikal, Y., & Bhatia, D. (2017). Genetics and Genomics of bacterial blight resistance in rice. in: J. Li (Eds), Advances in International Rice Research, Intech Publisher, London, pp.175-213.

Wang, G. L., Song, W. Y., Ruan, D. L., Sideris, S., & Ronald, P. C. (1996). The cloned gene, Xa21, confers resistance to multiple X. oryzae pv. oryzae isolates in transgenic plants. Molecular Plant-Microbe Interactions, 9, 850-855.

Wang, S., Liu, W., Lu, D., Lu, Z., Wang, X., Xue, J., & He X. (2020). Distribution of Bacterial Blight Resistance Genes in the Main Cultivars and Application of Xa23 in Rice Breeding. Frontiers in Plant Science, 11, 555228

Wolfe, M. S, Barrett, J. A, Shattock, R. C, Shaw, S. D., & Whitbread, R. (1976). Phenotype analysis: field application of the gene-for-gene hypothesis in host-pathogen relations. Annual Applied Biology, 82, 369–374.

Yang, S. Q., Liu, S. Y., Zhao, S., Yu, Y. H., Li, R. B., Duan, C. J., Tang, J. L., & Feng, J. X. (2012). Molecular and pathogenic characterization of new X.

oryzae pv. oryzae strains from the coastline region of Fangchenggang city in China. World Journal of Microbiology and Biotechnology, 29, 713–720.

Yang, Z., Sun, X., Wang, S., & Zhang, Q. (2003). Genetic and physical mapping of a new gene for bacterial blight resistance in rice. Theoretical Applied Genetics, 106, 1467-1472.

Yashitola, J., Krishnaveni, D., Reddy, A. P. K., & Sonti, R. V. (1997). Genetic diversity within the population of Xanthomonas oryzae pv. oryzae in India. Phytopathology, 87, 760–765.

Yoshimura, A. (1989) Genetic behaviour of quantitative resistance to bacterial

blight in rice. in: IRRI. (Eds) Bacterial Blight of Rice. Manila, Philippines, IRRI, pp. 193–197.

Published

2021-09-25

How to Cite

Haque, M. M., Masud, M. M., Hossain, M. M., Rashid, M. M., Alam, M. Z., & Islam, M. R. (2021). Assessment of potentiality of known bacterial blight resistant genes against Xanthomonas oryzae pv. oryzae pathotypes exist in Bangladesh. Archives of Agriculture and Environmental Science, 6(3), 257-267. https://doi.org/10.26832/24566632.2021.060301

Issue

Section

Research Articles